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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12061603_12062121_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12061603 - 12062121
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTATAACG
Flanking Amino Acid:
MVFSEEEKLKISKELIDLQI
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
68.4
36.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.2
0.68
0.7
73.9
31.2
Minor 5ss
29.1
-2.4
3.4
37.5
47.2
Minor BPS
60.3
0.18
1.7
67.32
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004763
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004930
12049002 - 12062753
13752
ENSAPLT00000004922
12049002 - 12062753
13752