Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12077532_12078338_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12077532 - 12078338

Intron Length:

807

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGGGAA

5'SS Class:

major

3'SS Sequence:

CCTTCCCGAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCCAT

U12 Branch Point Sequence:

CCTTCCCGAACA

Flanking Amino Acid:

KDCQCGEEDEYFDWVWDDLN

Intron Amino Acid Position:

103

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.4

0.43

1.1

62.2

38.2

Major BPS

57.1

0.18

1.4

66.4

42.2

Major PPT

66.4

0.37

61.7

33.6

Minor 5ss

30.5

-2.2

3.6

46.9

Minor BPS

56.7

0.21

1.9

68.97

43.1

Associated Gene:

Gene:

SPSB3

Ensembl Gene ID:

ENSAPLG00000005074

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034995

12074864 - 12081136

6273

ENSAPLT00000005240

12075347 - 12081136

5790