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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12152270_12153264_F

Intron Information:

Intron Rank:
150316
Intron Class:
major
Intron Phase:
Intron Coordinates:
12152270 - 12153264
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGACT
5'SS Class:
major
3'SS Sequence:
TCCCATTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TACTGTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
0.9
73.9
36.1
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
71.4
0.48
1
67.3
37.6
Minor 5ss
29.6
-2.3
3.1
37.9
40.9
Minor BPS
59.7
0.29
1.7
66.7
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030785
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017326
12151651 - 12153677
2027