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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12180078_12180182_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12180078 - 12180182
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGCC
5'SS Class:
major
3'SS Sequence:
TCTGTCCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
TCCTTGTCACCC
Flanking Amino Acid:
NMKKYCKKDYVVQVNILEME
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
68.8
38
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
76.7
0.6
0.8
73.7
31.4
Minor 5ss
31
-2.2
3.5
43.1
44.2
Minor BPS
41.9
-0.6
2.3
53.1
45.1

Associated Gene:

Gene:
NTN3
Ensembl Gene ID:
ENSAPLG00000020398
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027847
12178538 - 12199158
20621