Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12180258_12185055_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12180258 - 12185055

Intron Length:

4798

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

TCACCCTTACCC

Flanking Amino Acid:

SLVTSTEAPADCDSYCKPAK

Intron Amino Acid Position:

539

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.5

1.1

0.7

87.9

25.6

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

0.81

0.7

80.9

24.2

Minor 5ss

35.3

-1.7

3.2

50.4

Minor BPS

62.4

0.37

1.7

68.7

42.5

Associated Gene:

Gene:

NTN3

Ensembl Gene ID:

ENSAPLG00000020398

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034154

12178538 - 12199158

20621

ENSAPLT00000027847

12178538 - 12199158

20621