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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12185110_12185777_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12185110 - 12185777
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CTTTCTTTAAGA
Flanking Amino Acid:
QSRSPVAPCIKIPAINPTSL
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1
59.9
39.3
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
32.2
-2
2.9
42.7
37.7
Minor BPS
71.8
0.68
1.6
78.6
38.6

Associated Gene:

Gene:
NTN3
Ensembl Gene ID:
ENSAPLG00000020398
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034154
12178538 - 12199158
20621
ENSAPLT00000027847
12178538 - 12199158
20621