Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12185928_12191706_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12185928 - 12191706

Intron Length:

5779

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCCAG

5'SS Class:

strong_major

3'SS Sequence:

TCTTCCCACCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAC

U12 Branch Point Sequence:

TTCTTCCCACCC

Flanking Amino Acid:

KSITDRKACKACDCHPVGAA

Intron Amino Acid Position:

471

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

64.9

42.8

Major BPS

62.4

0.31

1.2

72.4

34.6

Major PPT

74.1

0.54

0.8

66.3

34.7

Minor 5ss

31.8

-2.1

37.6

47.1

Minor BPS

-0.3

2.1

62.62

Associated Gene:

Gene:

NTN3

Ensembl Gene ID:

ENSAPLG00000020398

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034154

12178538 - 12199158

20621

ENSAPLT00000027847

12178538 - 12199158

20621