Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12261159_12261230_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12261159 - 12261230

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGGGCC

5'SS Class:

major

3'SS Sequence:

GCTTCCCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CTCACGCCAAGC

Flanking Amino Acid:

SPETSRKLNSDLHGLSDEEG

Intron Amino Acid Position:

225

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

68.8

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

80.1

0.68

0.8

73.3

31.6

Minor 5ss

-2.2

3.5

43.1

44.2

Minor BPS

34.6

-1.1

2.4

43.69

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007522

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007800

12258042 - 12266871

8830