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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12261442_12261755_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12261442 - 12261755
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGCAGC
5'SS Class:
major
3'SS Sequence:
CCACTTCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GATCCTTTATTT
Flanking Amino Acid:
RHQQVQDYIQQMEEIWREMR
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
63.3
43.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
68.6
0.42
1
64.7
36.2
Minor 5ss
33.2
-1.9
3.1
43.1
44.1
Minor BPS
57.7
0.32
1.6
71.4
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007522
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007800
12258042 - 12266871
8830