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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12261923_12262158_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12261923 - 12262158
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAAAA
5'SS Class:
major
3'SS Sequence:
TTCCATCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATATTTTTCATT
Flanking Amino Acid:
LTLPLQIFELVHFFTYDREF
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
73
33.3
Major BPS
100
1.24
0.5
100
0
Major PPT
76.1
0.59
0.8
73.4
31.2
Minor 5ss
26.9
-2.7
2.7
23.1
36.9
Minor BPS
56.7
0.29
1.7
74.15
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007522
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007800
12258042 - 12266871
8830