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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12262565_12262856_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12262565 - 12262856
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCTC
5'SS Class:
major
3'SS Sequence:
TGCCGTTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCACAT
U12 Branch Point Sequence:
CCCTCCAGCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
63.9
42.4
Major BPS
53.7
0.09
1.1
60.7
37.6
Major PPT
74.6
0.55
0.9
65.1
41.2
Minor 5ss
28.5
-2.5
3.6
40.5
46
Minor BPS
43.5
-0.5
2.1
52.55
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007522
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007800
12258042 - 12266871
8830