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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12264929_12266242_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12264929 - 12266242
Intron Length:
1314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TCTGTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCAG
U12 Branch Point Sequence:
CAGGGGGTGACG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
47.3
-0.1
1.7
57.1
49.4
Major PPT
75.7
0.58
0.8
69.7
31.1
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
30.2
-1.7
2.6
29.95
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007522
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007800
12258042 - 12266871
8830