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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12266334_12266742_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12266334 - 12266742
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
CTCCCCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
GCATCCTGAGTG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57
44.6
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
74.6
0.55
0.7
68.5
25.1
Minor 5ss
38.3
-1.3
3
47.3
48.1
Minor BPS
48
-0.2
1.8
50.08
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007522
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007800
12258042 - 12266871
8830