Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12437008_12446464_R

Intron Information:

Intron Rank:

136717

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

12437008 - 12446464

Intron Length:

9457

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTTCCTCTC

5'SS Class:

weak_major

3'SS Sequence:

TTTTTATTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATTTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.5

0.01

1.4

50.3

46.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

93.2

0.97

0.7

88.4

27.5

Minor 5ss

39.2

-1.2

46.1

42.3

Minor BPS

63.1

0.41

1.9

80.26

34.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020998

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022509

12389184 - 12446905

57722