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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12458691_12459069_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12458691 - 12459069
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCGCT
5'SS Class:
major
3'SS Sequence:
TCTCCTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCTCCTCTCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67.6
37.6
Major BPS
79
0.72
1
69
38.9
Major PPT
81.1
0.7
0.7
75.6
26.5
Minor 5ss
33.7
-1.9
3.4
44.7
44.3
Minor BPS
48.5
-0.1
2.1
65.11
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022804
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019394
12457919 - 12463653
5735
ENSAPLT00000009419
12458635 - 12475678
17044