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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12459761_12460753_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12459761 - 12460753
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAC
U12 Branch Point Sequence:
TCACAGTTAACG
Flanking Amino Acid:
LPQTVTVQQQGCQLKLPHPY
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
67.1
0.43
1.2
69.3
37.7
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
46.8
-0.3
2.3
54.77
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022804
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023160
12459070 - 12475335
16266
ENSAPLT00000019394
12457919 - 12463653
5735
ENSAPLT00000009419
12458635 - 12475678
17044