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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12460808_12462591_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12460808 - 12462591
Intron Length:
1784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGAATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CCCTTTTGAATT
Flanking Amino Acid:
PYRKAYSRNCRAWERSRLCQ
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
81.6
0.71
0.9
78
40.1
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
53
0.17
1.4
63.05
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022804
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019394
12457919 - 12463653
5735
ENSAPLT00000009419
12458635 - 12475678
17044
ENSAPLT00000023160
12459070 - 12475335
16266