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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12462677_12463049_F

Intron Information:

Intron Rank:
4
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
12462677 - 12463049
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
GCTGCTGTTTGAG|T
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TGTTCCTTAAGC
Flanking Amino Acid:
KRFTERIQTTFCSPMPALSP
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.2
-0
1.3
50.1
41.8
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
51
0.02
1.7
61
44.6
Minor 5ss
95.2
1.52
0.7
94.3
17.7
Minor BPS
77.6
0.85
1.6
83.37
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022804
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023160
12459070 - 12475335
16266
ENSAPLT00000019394
12457919 - 12463653
5735
ENSAPLT00000009419
12458635 - 12475678
17044