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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12463159_12463390_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12463159 - 12463390
Intron Length:
232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
GTATGCTCATGC
Flanking Amino Acid:
LRQYVEAEPADHPTLQREYE
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
77.9
0.63
0.8
69.7
36.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
41
-0.7
2.3
52.18
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022804
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023160
12459070 - 12475335
16266
ENSAPLT00000019394
12457919 - 12463653
5735
ENSAPLT00000009419
12458635 - 12475678
17044