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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12466435_12474678_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
12466435 - 12474678
Intron Length:
8244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAACC
5'SS Class:
major
3'SS Sequence:
TGTTTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GGGTCTTTATTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
0.9
70.4
33.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.9
0.81
0.7
84.9
29.9
Minor 5ss
29.4
-2.4
2.8
33.3
35.2
Minor BPS
57.7
0.32
1.6
69.06
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022804
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009419
12458635 - 12475678
17044