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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12514562_12514987_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12514562 - 12514987
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
CCCAACCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTCCCCAACC
Flanking Amino Acid:
PAEDILSVRAVHSHLKYLVD
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
62.1
43.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
66.4
0.37
0.9
57.8
32.7
Minor 5ss
35.3
-1.7
3.1
51.2
45.1
Minor BPS
61.5
0.34
1.9
75.8
40.5

Associated Gene:

Gene:
CCNF
Ensembl Gene ID:
ENSAPLG00000008947
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047000
12513631 - 12524811
11181
ENSAPLT00000040502
12512437 - 12524811
12375
ENSAPLT00000009358
12512437 - 12524811
12375