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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12518734_12519154_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12518734 - 12519154
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTACTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAC
U12 Branch Point Sequence:
TTTTCTCTACTA
Flanking Amino Acid:
YAAKGCWEAQIALAKACGNG
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
52.9
0.07
1.1
59.6
32.7
Major PPT
82.9
0.74
0.8
77.2
30
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
57.6
0.24
1.9
75.53
36.4

Associated Gene:

Gene:
CCNF
Ensembl Gene ID:
ENSAPLG00000008947
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047000
12513631 - 12524811
11181
ENSAPLT00000040502
12512437 - 12524811
12375
ENSAPLT00000009358
12512437 - 12524811
12375