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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12519995_12520659_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12519995 - 12520659
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGGTTT
5'SS Class:
major
3'SS Sequence:
TTTGATATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TATTCTTTGATA
Flanking Amino Acid:
LGIACMVICTRFISKEILTI
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
70.8
41.9
Major BPS
84
0.85
0.9
75
39.9
Major PPT
80.6
0.69
0.9
74.3
39.8
Minor 5ss
41.8
-0.9
3.7
64.2
47.3
Minor BPS
75.6
0.8
1
78.77
31

Associated Gene:

Gene:
CCNF
Ensembl Gene ID:
ENSAPLG00000008947
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047000
12513631 - 12524811
11181
ENSAPLT00000040502
12512437 - 12524811
12375
ENSAPLT00000009358
12512437 - 12524811
12375