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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12520784_12521125_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12520784 - 12521125
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TTGTCTTGTATT
Flanking Amino Acid:
IISALEGKIRIPTIVDYKEV
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.8
38.1
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
73
0.52
0.9
73.6
35.7
Minor 5ss
37.9
-1.4
2.9
40.9
45.3
Minor BPS
55.8
0.26
1.8
76.18
41.3

Associated Gene:

Gene:
CCNF
Ensembl Gene ID:
ENSAPLG00000008947
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040502
12512437 - 12524811
12375
ENSAPLT00000009358
12512437 - 12524811
12375
ENSAPLT00000047000
12513631 - 12524811
11181