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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12522739_12522951_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12522739 - 12522951
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCTAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATG
Flanking Amino Acid:
LSSPSGKRTKRRREDSIQDD
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
1.1
84.1
34
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.9
0.79
0.8
79.9
32.3
Minor 5ss
25.3
-2.8
3.5
34
41.4
Minor BPS
78
0.74
1.1
78.3
32.8

Associated Gene:

Gene:
CCNF
Ensembl Gene ID:
ENSAPLG00000008947
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047000
12513631 - 12524811
11181
ENSAPLT00000040502
12512437 - 12524811
12375
ENSAPLT00000009358
12512437 - 12524811
12375