About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12523122_12523490_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12523122 - 12523490
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGCTT
5'SS Class:
major
3'SS Sequence:
ATCATCCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTCCCTTTTATC
Flanking Amino Acid:
QESEGERDGDVTGPSGILDV
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
71.3
40.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
77
0.61
0.9
70
35.8
Minor 5ss
31.4
-2.1
3.5
44.3
44.6
Minor BPS
57.8
0.23
1.6
67.57
38.5

Associated Gene:

Gene:
CCNF
Ensembl Gene ID:
ENSAPLG00000008947
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047000
12513631 - 12524811
11181
ENSAPLT00000040502
12512437 - 12524811
12375
ENSAPLT00000009358
12512437 - 12524811
12375