About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12523885_12523977_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12523885 - 12523977
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CGCTTTTTACTT
Flanking Amino Acid:
ARSSDGKCDRRFPGNSISVI
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.8
76
39.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.4
0.71
0.8
74.2
36.5
Minor 5ss
23.2
-3.1
3.6
31.6
42.6
Minor BPS
50.4
0.09
1.6
62.87
42.6

Associated Gene:

Gene:
CCNF
Ensembl Gene ID:
ENSAPLG00000008947
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009358
12512437 - 12524811
12375