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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12526700_12527604_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12526700 - 12527604
Intron Length:
905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGGGCT
5'SS Class:
major
3'SS Sequence:
CCTCATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CATTCCTCATTT
Flanking Amino Acid:
QCFMGQRAIPDALQRYLQQV
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
0.9
68.3
36.4
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
81.8
0.71
0.8
75.8
32.2
Minor 5ss
32.5
-2
3.6
47.1
48.5
Minor BPS
56.1
0.27
1.8
73.35
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045152
12526551 - 12571988
45438
ENSAPLT00000041300
12525531 - 12571761
46231
ENSAPLT00000009290
12526551 - 12535419
8869