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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12527667_12527972_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12527667 - 12527972
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGAGAA
5'SS Class:
major
3'SS Sequence:
TTGATTATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTGCATTGATT
Flanking Amino Acid:
NVEAVVEKKEKYKADVTCLL
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
65
35
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79
0.65
1
70.5
44.3
Minor 5ss
30.1
-2.3
3.6
37.4
41.8
Minor BPS
58.6
0.35
1.7
75.82
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045152
12526551 - 12571988
45438
ENSAPLT00000041300
12525531 - 12571761
46231
ENSAPLT00000009290
12526551 - 12535419
8869