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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12529369_12529731_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12529369 - 12529731
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTAGA
5'SS Class:
major
3'SS Sequence:
TGTTTACTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TTCTGTTTACTT
Flanking Amino Acid:
KAAFQIVVRLLDCLEYLHEN
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
70.9
40.9
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
80
0.67
0.8
74.7
35.1
Minor 5ss
34.2
-1.8
2.9
39.6
40.9
Minor BPS
53.2
0.18
2
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009290
12526551 - 12535419
8869