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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12529369_12531218_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12529369 - 12531218
Intron Length:
1850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGCT
5'SS Class:
major
3'SS Sequence:
TGTTTACTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TTCTGTTTACTT
Flanking Amino Acid:
FSSELQRKTQLDCLEYLHEN
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
70.9
39.4
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
80
0.67
0.8
74.7
35.1
Minor 5ss
30.3
-2.3
3.3
42
44.7
Minor BPS
53.2
0.18
2
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045152
12526551 - 12571988
45438
ENSAPLT00000041300
12525531 - 12571761
46231