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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12530411_12531218_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12530411 - 12531218
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGCT
5'SS Class:
major
3'SS Sequence:
TCTTGCCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGCAG
U12 Branch Point Sequence:
ATCTGCTGCACT
Flanking Amino Acid:
FFQRAAKKDTVDKWKKLHSL
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
70.9
39.4
Major BPS
45.8
-0.2
1.8
59.7
46.7
Major PPT
78.4
0.64
0.8
70
36.6
Minor 5ss
30.3
-2.3
3.3
42
44.7
Minor BPS
47.4
-0.1
2.3
70.92
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009290
12526551 - 12535419
8869