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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12531286_12533103_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12531286 - 12533103
Intron Length:
1818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
CTGTTTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TGTTGCTGAAGT
Flanking Amino Acid:
PQKQRFSLKLDAKDGKIYNE
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
78.7
30.8
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
79.4
0.66
0.8
78
30.9
Minor 5ss
43.3
-0.7
3.1
64.1
41.5
Minor BPS
53.2
0.18
2.2
77.65
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009290
12526551 - 12535419
8869