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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12531286_12534291_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12531286 - 12534291
Intron Length:
3006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTGTGG
5'SS Class:
major
3'SS Sequence:
CTGTTTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TGTTGCTGAAGT
Flanking Amino Acid:
GARRARADVRRMPKMARSTT
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.1
50.4
42.8
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
79.4
0.66
0.8
78
30.9
Minor 5ss
29.7
-2.3
3.3
38.4
46.6
Minor BPS
53.2
0.18
2.2
77.65
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045152
12526551 - 12571988
45438
ENSAPLT00000041300
12525531 - 12571761
46231