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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12533157_12534291_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12533157 - 12534291
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTGTGG
5'SS Class:
major
3'SS Sequence:
CATCCTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
GCTTCTGTAACC
Flanking Amino Acid:
EHGGPGLMYEAQSASGACPQ
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.1
50.4
42.8
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
74.6
0.55
0.8
68.3
31.6
Minor 5ss
29.7
-2.3
3.3
38.4
46.6
Minor BPS
59.6
0.28
2
70.5
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009290
12526551 - 12535419
8869