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Intron Name: Anas_platyrhynchos_platyrhynchos_15_12535842_12571682_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

12535842 - 12571682

Intron Length:

35841

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCCC

5'SS Class:

strong_major

3'SS Sequence:

AGCCTGCTGCCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTACCAT

U12 Branch Point Sequence:

GCTACCATGAGG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

65.8

40.2

Major BPS

53.2

0.08

1.4

64.5

41.2

Major PPT

59.1

0.2

1.1

50.2

43.4

Minor 5ss

33.7

-1.9

42.6

44.4

Minor BPS

44.9

-0.5

49.16

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008922

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045152

12526551 - 12571988

45438

ENSAPLT00000041300

12525531 - 12571761

46231