Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1255419_1259474_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1255419 - 1259474

Intron Length:

4056

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTCATTTCT

5'SS Class:

weak_major

3'SS Sequence:

TTAACCCTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGTTAAC

U12 Branch Point Sequence:

ACTTCCCTAACC

Flanking Amino Acid:

LFALYHSARGDRP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.8

0.02

1.4

58.5

41.1

Major BPS

62.1

0.3

1.2

38.7

Major PPT

66.4

0.37

1.1

58.8

42.6

Minor 5ss

41.2

-1

2.9

61.6

42.3

Minor BPS

70.4

0.62

1.7

77.72

37.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016718

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031328

1255408 - 1261170

5763