Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12557247_12557958_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12557247 - 12557958

Intron Length:

712

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGGGA

5'SS Class:

major

3'SS Sequence:

CCTCCTGGTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

CATCTCTCATCC

Flanking Amino Acid:

SVTTMEEVFLRVGKLVDSSM

Intron Amino Acid Position:

986

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

42.4

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

69.7

0.44

64.1

36.6

Minor 5ss

27.2

-2.6

3.6

37.6

47.2

Minor BPS

47.3

-0.2

1.8

56.95

41.4

Associated Gene:

Gene:

ABCA3

Ensembl Gene ID:

ENSAPLG00000002878

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025452

12540852 - 12567629

26778

ENSAPLT00000003006

12539476 - 12564912

25437