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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12563945_12564065_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12563945 - 12564065
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCCTCTCCATCT
Flanking Amino Acid:
PHADKLVRTYSGGNKRKLSA
Intron Amino Acid Position:
1668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
80
0.68
0.7
73.6
24.6
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
42.2
-0.5
2
55.99
46.5

Associated Gene:

Gene:
ABCA3
Ensembl Gene ID:
ENSAPLG00000002878
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025452
12540852 - 12567629
26778
ENSAPLT00000003006
12539476 - 12564912
25437