Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12568532_12568830_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12568532 - 12568830

Intron Length:

299

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTGAGTGAG

5'SS Class:

major

3'SS Sequence:

CCCTCTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCCTAT

U12 Branch Point Sequence:

GCCCTCCTATGC

Flanking Amino Acid:

VEKTPDPSLKYFVPIDLEEW

Intron Amino Acid Position:

305

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

70.4

35.5

Major BPS

56.4

0.16

1.3

56.1

41.3

Major PPT

82.5

0.73

0.7

79.8

25.7

Minor 5ss

-2.4

3.2

35.6

41.4

Minor BPS

38.1

-0.9

1.9

40.26

39.4

Associated Gene:

Gene:

MCRIP2

Ensembl Gene ID:

ENSAPLG00000003848

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003929

12568473 - 12572508

4036