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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12569137_12571682_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12569137 - 12571682
Intron Length:
2546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TCCTCCTCAATC
Flanking Amino Acid:
RLQPGAWPPASPLPKLVFNR
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
72.7
0.51
0.8
65.9
30.1
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
66.2
0.49
1.6
70.19
41.8

Associated Gene:

Gene:
MCRIP2
Ensembl Gene ID:
ENSAPLG00000003848
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003929
12568473 - 12572508
4036