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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12571762_12571904_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12571762 - 12571904
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
CTGCCGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCGGCTCTGACG
Flanking Amino Acid:
PSKLATQRRTGPTQQPVESK
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
65.1
0.34
0.9
57.7
33.2
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
43.8
-0.6
1.8
42.05
43.8

Associated Gene:

Gene:
MCRIP2
Ensembl Gene ID:
ENSAPLG00000003848
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003929
12568473 - 12572508
4036
Gene:
Ensembl Gene ID:
ENSAPLG00000008922
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045152
12526551 - 12571988
45438