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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12579271_12579428_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12579271 - 12579428
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GCGTTCTGATCC
Flanking Amino Acid:
DAHLGAALHGGAVQGRRGAA
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
87.1
0.84
0.7
80.8
31.2
Minor 5ss
32.6
-2
3.4
46.8
48.5
Minor BPS
48.3
-0.1
1.7
55.28
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022464
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018890
12573753 - 12581072
7320