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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12580317_12580393_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12580317 - 12580393
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
TCTGTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTGAT
U12 Branch Point Sequence:
CCCTCCCGACCC
Flanking Amino Acid:
LRPTGCAWRGWWTCRPTTRA
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.5
38.5
Major BPS
56.3
0.16
1.3
48.7
45.1
Major PPT
79.6
0.67
0.9
72.9
37.4
Minor 5ss
34.1
-1.8
3.5
46.6
44.1
Minor BPS
43.6
-0.5
2
51.3
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022464
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018890
12573753 - 12581072
7320