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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12591903_12599861_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12591903 - 12599861
Intron Length:
7959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTGCCTTACTG
Flanking Amino Acid:
IFRSYSRGAQGILLVYDITN
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
86.3
0.82
0.6
85.2
22.3
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
63.7
0.29
1.8
70.75
43.1

Associated Gene:

Gene:
RAB40C
Ensembl Gene ID:
ENSAPLG00000004049
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004146
12589476 - 12603450
13975