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Intron Name: Anas_platyrhynchos_platyrhynchos_15_12599923_12602034_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12599923 - 12602034

Intron Length:

2112

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

GTAATTTTAGTT

Flanking Amino Acid:

LDGRRVKLELWDTSGQGRFC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

0.9

76.6

34.9

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

88.1

0.86

0.8

83.9

31.1

Minor 5ss

44.5

-0.6

3.1

61.3

44.6

Minor BPS

50.5

0.09

1.5

65.78

39.2

Associated Gene:

Gene:

RAB40C

Ensembl Gene ID:

ENSAPLG00000004049

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004146

12589476 - 12603450

13975