About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12632454_12632537_R

Intron Information:

Intron Rank:
135190
Intron Class:
major
Intron Phase:
Intron Coordinates:
12632454 - 12632537
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTCTT
5'SS Class:
major
3'SS Sequence:
TGCTGTTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGTAC
U12 Branch Point Sequence:
CGCTGTGTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
71.9
39.5
Major BPS
48.6
-0
1.5
49.1
46
Major PPT
73.8
0.54
1
68.5
42.1
Minor 5ss
36.9
-1.5
3.2
55.9
42.3
Minor BPS
37.8
-0.8
2.3
50.88
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020096
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031451
12631393 - 12633534
2142