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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12656230_12656404_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12656230 - 12656404
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGGAGG
5'SS Class:
major
3'SS Sequence:
ATACTTACTCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TGTGCAGTAAAT
Flanking Amino Acid:
TDQLLMPEVPDCSSSQSNNY
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
57.7
46.6
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
50.9
0.02
1.7
56
43.8
Minor 5ss
34.6
-1.8
3.3
49.6
46.4
Minor BPS
46.3
-0.2
2.4
71.29
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004511
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004646
12656116 - 12664241
8126