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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12686664_12686952_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12686664 - 12686952
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTGGTGGCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
CCCAGCTGATGC
Flanking Amino Acid:
LEFALFQEGSRRSDTVDSHL
Intron Amino Acid Position:
912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74
38.4
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
59
0.2
1.1
51.8
41.7
Minor 5ss
33.3
-1.9
2.8
38.7
46.6
Minor BPS
34.6
-1.1
2
34.83
41.5

Associated Gene:

Gene:
CAPN15
Ensembl Gene ID:
ENSAPLG00000003550
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003628
12686416 - 12723320
36905
ENSAPLT00000003626
12686416 - 12723737
37322