Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12691393_12693657_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12691393 - 12693657

Intron Length:

2265

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTGCTCTCGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTGAT

U12 Branch Point Sequence:

TGCGCACTGATG

Flanking Amino Acid:

WENIVTFCRENKVNFVDDSF

Intron Amino Acid Position:

560

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

38.4

Major BPS

71.2

0.53

37.5

Major PPT

82.1

0.72

0.8

77.1

31.6

Minor 5ss

33.3

-1.9

2.8

38.7

46.6

Minor BPS

41.6

-0.8

44.92

41.5

Associated Gene:

Gene:

CAPN15

Ensembl Gene ID:

ENSAPLG00000003550

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003626

12686416 - 12723737

37322

ENSAPLT00000003628

12686416 - 12723320

36905